Index

A

applied_transform() (in module ramac.utils)

apply_rotation_and_translation() (in module ramac.utils)

C

compare_slices_interactive() (in module ramac.plots) create_final_dataframe_timepoints() (in module ramac.correspondence_csv_input)

create_transformed_dataframe() (in module ramac.transform_coordinates) create_trim_dataframe() (in module ramac.utils)

D

display_images() (in module ramac.registration)

display_images_with_alpha() (in module ramac.registration)

E

end_plot() (in module ramac.registration)

F

find_corresponding_lesions_timepoints() (in module ramac.correspondence_csv_input)

I

insert_lesion() (in module ramac.utils)

L

list_to_dataframe() (in module ramac.utils)

M

mask_air() (in module ramac.preprocessing) merge_indices() (in module ramac.merge_dataframe) module ramac.correspondence_csv_input ramac.merge_dataframe ramac.plots ramac.preprocessing ramac.registration ramac.transform_coordinates ramac.utils

N

numpy_array_to_sitk() (in module ramac.utils)

numpy_point_to_sitk() (in module ramac.utils) numpy_points_to_sitk() (in module ramac.utils)

O

ordinal() (in module ramac.plots)

P

plot_lesion_correspondences_timepoints() (in module ramac.correspondence_csv_input) plot_lesions() (in module ramac.plots) plot_lesions_1() (in module ramac.plots) plot_slice() (in module ramac.plots)

plot_slices_interactive() (in module ramac.plots) plot_triplanar() (in module ramac.plots) plot_values() (in module ramac.registration) process_lesion_timepoints() (in module ramac.correspondence_csv_input)

R

ramac.correspondence_csv_input module ramac.merge_dataframe module ramac.plots module ramac.preprocessing module ramac.registration module

ramac.transform_coordinates module ramac.utils module read_lesion_csv() (in module ramac.correspondence_csv_input) (in module ramac.transform_coordinates) registration_3d_rigid_gradient_descent() (in module ramac.registration) registration_3d_rigid_series() (in module ramac.registration) rotation_matrix() (in module ramac.utils) round_coordinates_to_integer() (in module ramac.utils)

S

save_lesion_coordinates() (in module ramac.utils)

save_transformed_dataframe() (in module ramac.utils) start_plot() (in module ramac.registration)

T

transform_centroid() (in module ramac.transform_coordinates)

transform_phantom_np() (in module ramac.utils) transform_physical_to_index() (in module ramac.transform_coordinates)

U

update_multires_iterations() (in module ramac.registration)

V

voxel_tuples_from_dataframe() (in module ramac.utils)