ramac

• ramac package
  • ramac.correspondence_csv_input module
    • create_final_dataframe_timepoints()
    • find_corresponding_lesions_timepoints()
    • plot_lesion_correspondences_timepoints()
    • process_lesion_timepoints()
    • read_lesion_csv()
  • ramac.input_transform module
  • ramac.merge_dataframe module
    • merge_indices()
  • ramac.plots module
    • compare_slices_interactive()
    • ordinal()
    • plot_lesions()
    • plot_lesions_1()
    • plot_slice()
    • plot_slices_interactive()
    • plot_triplanar()
  • ramac.preprocessing module
    • mask_air()
  • ramac.registration module
    • display_images()
    • display_images_with_alpha()
    • end_plot()
    • plot_values()
    • registration_3d_rigid_gradient_descent()
    • registration_3d_rigid_series()
    • start_plot()
    • update_multires_iterations()
  • ramac.transform_coordinates module
    • create_transformed_dataframe()
    • read_lesion_csv()
    • transform_centroid()
    • transform_physical_to_index()
  • ramac.utils module
    • applied_transform()
    • apply_rotation_and_translation()
    • create_trim_dataframe()
    • insert_lesion()
    • list_to_dataframe()
    • numpy_array_to_sitk()
    • numpy_point_to_sitk()
    • numpy_points_to_sitk()
    • rotation_matrix()
    • round_coordinates_to_integer()
    • save_lesion_coordinates()
    • save_transformed_dataframe()
    • transform_phantom_np()
    • voxel_tuples_from_dataframe()